plot-fcFilterList-ANY-method: plot a 'fcFilterList'

In RGLab/openCyto: Hierarchical Gating Pipeline for flow cytometry data

plot a fcFilterList

Description

It is usually called by plot method for fcTree instead of directly by users.

Usage

## S4 method for signature 'fcFilterList,ANY'
plot(
  x,
  y,
  samples = NULL,
  posteriors = FALSE,
  xlim = NULL,
  ylim = NULL,
  node = NULL,
  data = NULL,
  breaks = 20,
  lwd = 1,
  ...
)

Arguments

x	fcFilterList
y	character channel name
samples	character a vector of sample names to be plotted
posteriors	logical indicating whether posteriors should be plotted
xlim, ylim	scale settings for x,y axises
node	character population name associated with the fcFilterList
data	GatingSet object
breaks	passed to hist
lwd	line width
...	other arguments passed to base plot

Examples

## Not run:  
 env1<-new.env(parent=emptyenv())
 #gt is a gatingTemplate, gs is a GatingSet
 gt_gating(gt,gs,env1) #the flowClust gating results are stored in env1 
 plot(env1$fct,"nonDebris",post=T) #plot the priors as well as posteriors for the "nonDebris" gate

## End(Not run)

RGLab/openCyto documentation built on Aug. 23, 2023, 6:53 a.m.