R/globals.R

In RHReynolds/colochelpR: `colochelpR` is a home for helper functions for executing coloc

# bypass R CMD Check notes, related to tidyverse non-standard evaluation
# https://www.r-bloggers.com/2019/08/no-visible-binding-for-global-variable/
utils::globalVariables(c(
  ".",
  "A1",
  "A2",
  "ALT",
  "Al1",
  "Al2",
  "AssessedAllele",
  "BETA",
  "BP",
  "Beta",
  "CHR",
  "EAF_HRC",
  "Effect_allele",
  "FRQ",
  "FRQ_A_33640",
  "Freq.A1",
  "Gene",
  "INFO",
  "LowerOR",
  "MAF_HRC",
  "Marker",
  "MarkerName",
  "N",
  "Non_Effect_allele",
  "NrSamples",
  "OR",
  "OR(MinAllele)",
  "OtherAllele",
  "P",
  "PEC_id",
  "POS",
  "PP.H3.abf",
  "PP.H4.abf",
  "PValue",
  "Pvalue",
  "REF",
  "RefSNP_id",
  "Rsid",
  "SE",
  "SNP",
  "SNP.PP.H4",
  "SNPChr",
  "SNPPos",
  "SNP_1",
  "SNP_id",
  "SNPloc",
  "a1",
  "a2",
  "alleles_as_ambig",
  "b",
  "beta_1",
  "beta_2",
  "bind_cols",
  "coloc.abf",
  "coloc_results_annotated",
  "data_frame",
  "eQTL_dataset",
  "effect.allele",
  "effect.allele.frequency",
  "effect.size",
  "freq",
  "gene_id",
  "gr_strand",
  "loc",
  "lower_beta",
  "maf",
  "n_cases",
  "n_controls",
  "n_total",
  "nominal_pval",
  "or",
  "other.allele",
  "p",
  "p.value_1",
  "p.value_2",
  "pos",
  "pval",
  "ratio_PPH4_PPH3",
  "regression_slope",
  "se",
  "signif_1Mb_window_max",
  "signif_1Mb_window_min",
  "snp",
  "snpid",
  "seqnames",
  "strand",
  "stdBeta",
  "sum_PPH3_PPH4",
  "summary_results"
))