RaikOtto/artdeco: Alikeness Based on Regression on Transciptome DECOnvolution

This packages determines the similarity cancer sample transcriptomes to samples with known differentiation stage. Training data input are healthy training scRNA samples and either RNA-seq Bulk or microarray data. The output is an estimate of the input's similarity to pre-trained differentiated stages.

Getting started

Package details

Bioconductor views GeneExpression Microarray RNASeq Regression Sequencing SupportVectorMachine
Maintainer
LicenseArtistic-2.0
Version0.99.3
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("RaikOtto/artdeco")
RaikOtto/artdeco documentation built on Oct. 28, 2020, 8:46 p.m.