simulateCounts: Simulate count data based on negative binomial distribution

In RaikOtto/artdeco: Alikeness Based on Regression on Transciptome DECOnvolution

Description

simulateCounts simulates the expression values using a negative binomial distribution with parameters estimated by estimateParameters. This function is used by simulateCellTypes.

Usage

simulateCounts(simParam, nSamples, nGenes, simSeed = NULL, simMarkers = TRUE)

Arguments

simParam	List of parameters estimated by estimateParameters.
nSamples	A integer specifing the number of samples to be simulated.
nGenes	A integer specifing the number of genes to be simulated.
simSeed	A integer specifing seed for simulation
simMarkers	Logical, indicating whether genes to be simulated are markers or not

Value

Matrix with simulated count values.

RaikOtto/artdeco documentation built on Nov. 3, 2021, 6:18 p.m.