add_deconvolution_training_model_music: add_deconvolution_training_model_music

In RaikOtto/artdeco: Alikeness Based on Regression on Transciptome DECOnvolution

Description

add_deconvolution_training_model_music adds a new model

Usage

add_deconvolution_training_model_music(
    transcriptome_data,
    model_name,
    subtype_vector
)

Arguments

transcriptome_data	Path to transcriptomic data to be used for training. Has to contain the cell subtypes to which the similarity will be calculated. Note that the row names have to contain the HGNC symbols and the column names the sample names.
model_name	Name of the model.
subtype_vector	Character vector containing the subtype labels of the training data samples (transcriptome_data).

Value

Stores a new model in the package directory

Examples

data("Lawlor") # Data from Lawlor et al.
data(meta_data)

# extract the training sample subtype labels
subtype_vector = as.character(meta_data$Subtype) 
add_deconvolution_training_model_music(
    transcriptome_data = Lawlor,
    model_name = "my_model",
    subtype_vector = subtype_vector
)

RaikOtto/artdeco documentation built on Nov. 3, 2021, 6:18 p.m.