NanoSD: This function calculates and plots standard deviation of nano...

In RichardLaBrie/paRafac_correction: Corrects EEM all at once before using Matlab for PARAFAC

This function calculates and plots standard deviation of nano files

Description

This function uses NanoMean to compute the standrad deviation to make sure that all nano files are similare

Usage

NanoSD(
  excitation = c(220, 450, 5),
  emission = c(230, 600, 2),
  EMCOL = F,
  split = "_",
  data.file = "data",
  fluorometer = "Cary Eclipse",
  EEMskip,
  sd = T,
  zlim = c(0, 1)
)

Arguments

excitation	is a vector of three variables of the scanning setup (min,max,interval). Default is c(220,450,5)
emission	is a vector of three variables of the scanning setup (min,max,interval). Default is c(230,600,2)
EMCOL	is a logical parameter indicating whether or not the emission are stored as column in the csv file. Default is FALSE.
split	is the symbol used to separate each EEM when using a multicell holder
data.file	is the name of the main folder where CDOM, FDOM and nano folders are
fluorometer	is a paramater for the fluorometer model. Default is "Cary Eclipse". Other model supported: "Shimadzu"
EEMskip	is a parameter to skip lines in EEM file before data. Default is 1
sd	is a logical parameter to calculate standard deviation with the NanoMean function. Default is True
zlim	is the intensity to plot the EEMs. Negative and values outside of scale bar will be white

RichardLaBrie/paRafac_correction documentation built on March 13, 2023, 2:11 p.m.