View source: R/cage_annotations.R
addNewTSSOnLeaders | R Documentation |
Add cage max peaks as new transcript start sites for each 5' leader (*) strands are not supported, since direction must be known.
addNewTSSOnLeaders(fiveUTRs, maxPeakPosition, removeUnused, cageMcol)
fiveUTRs |
(GRangesList) The 5' leaders or full transcript sequences |
maxPeakPosition |
The max peak for each 5' leader found by cage |
removeUnused |
logical (FALSE), if False: (standard is to set them to original annotation), If TRUE: remove leaders that did not have any cage support. |
cageMcol |
a logical (FALSE), if TRUE, add a meta column to the returned object with the raw CAGE counts in support for new TSS. |
a GRanges object of first exons
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