add_pseudo_5utrs_txdb_if_needed | R Documentation |
add_pseudo_5utrs_txdb_if_needed
add_pseudo_5utrs_txdb_if_needed(
txdb,
pseudo_5UTRS_if_needed = NULL,
minimum_5UTR_percentage = 30
)
txdb |
a TxDb object |
pseudo_5UTRS_if_needed |
integer, default NULL. If defined > 0, will add pseudo 5' UTRs if 'minimum_5UTR_percentage" (default 30 mRNAs (coding transcripts) do not have a leader. (NULL and 0 are both the ignore command) |
minimum_5UTR_percentage |
numeric, default 30. What minimum percentage of mRNAs most have a 5' UTRs (leaders), to not do the pseudo_UTR addition. If percentage is higher it addition is ignored, set to 101 to always do it. |
txdb (new txdb if it was done, old if not)
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