bedToGR: Converts bed style data.frame to GRanges
In Roleren/ORFik: Open Reading Frames in Genomics
bedToGR R Documentation
Converts bed style data.frame to GRanges
Description
For info on columns, see:
https://www.ensembl.org/info/website/upload/bed.html
Usage
bedToGR(x, skip.name = TRUE)
Arguments
x
A data.frame from imported bed-file,
to convert to GRanges
skip.name
default (TRUE), skip name column (column 4)
Value
a GRanges object from bed
See Also
Other utils:
convertToOneBasedRanges(),
export.bed12(),
export.bigWig(),
export.fstwig(),
export.wiggle(),
fimport(),
findFa(),
fread.bed(),
optimizeReads(),
readBam(),
readBigWig(),
readWig()
Roleren/ORFik documentation built on Dec. 18, 2024, 11:39 p.m.
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| bedToGR | R Documentation |
Converts bed style data.frame to GRanges
Description
For info on columns, see: https://www.ensembl.org/info/website/upload/bed.html
Usage
bedToGR(x, skip.name = TRUE)
Arguments
x |
A |
skip.name |
default (TRUE), skip name column (column 4) |
Value
a GRanges object from bed
See Also
Other utils:
convertToOneBasedRanges(),
export.bed12(),
export.bigWig(),
export.fstwig(),
export.wiggle(),
fimport(),
findFa(),
fread.bed(),
optimizeReads(),
readBam(),
readBigWig(),
readWig()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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