config_file: Get path for ORFik config in cache

In Roleren/ORFik: Open Reading Frames in Genomics

Get path for ORFik config in cache

Description

Get path for ORFik config in cache

Usage

config_file(
  cache = BiocFileCache::getBFCOption("CACHE"),
  query = "ORFik_config",
  ask = interactive(),
  old_config_location = "~/Bio_data/ORFik_config.csv"
)

Arguments

cache	path to bioc cache directory with rname from query argument. Default is: BiocFileCache::getBFCOption("CACHE") For info, see: [BiocFileCache::BiocFileCache()]
query	default: "ORFik_config". Exact rname of the file in cache.
ask	logical, default interactive().
old_config_location	path, old config location before BiocFileCache implementation. Will copy this to cache directory and delete old version. This is done to follow bioc rules on not writing to user home directory.

Value

a file path in cache

Examples

config_file()
# Another config path
config_file(query = "ORFik_config_2")

Roleren/ORFik documentation built on April 25, 2024, 8:41 p.m.