plot_QC_binder_signal_boxplot: Signal distribution across binders

In Rundmus/BAf-R_package: Binder Array data hanlding package in facility

Description

Depict a plot that displays signal distribution across samples

Usage

plot_QC_binder_signal_boxplot(
  baf,
  color_tbl_b = NULL,
  main = deparse(substitute(baf)),
  xlab = "Binders",
  ylab = "Signal Intensity",
  guide_line = TRUE,
  ...
)

plot_QC_binder_signal_boxplot.SBA(
  baf,
  color_tbl_b = default_color_SBA_bead(T),
  main = paste(unique(batch(baf, "binder")), collapse = ", "),
  xlab = "Beads",
  ylab = "Raw MFI",
  guide_line = TRUE,
  ...
)

Arguments

baf	an object of the BAf-class
color_tbl_b	the colors of the binders employed for positive or negative control on plot. The information should be provided as a data.frame, in which columns are name, reg (regular expression to find the binder), col (color), and type (positive , negative, or measure). If this is given as NULL, it results in no coloring.
main, xlab, ylab, ...	same as boxplot
guide_line	if some guide lines of controls are displayed.

Value

a list of color_tbl_b

Functions

• plot_QC_binder_signal_boxplot.SBA: when baf has the data from suspension bead arrays

Author(s)

Mun-Gwan Hong <[e-mail]>

Examples

data(sba)
plot_QC_binder_signal_boxplot(sba)

Rundmus/BAf-R_package documentation built on May 18, 2020, 12:59 p.m.