plot_QC_sample_signal_boxplot: Signal distribution across samples

In Rundmus/BAf-R_package: Binder Array data hanlding package in facility

Description

Draw a plot that displays signal distribution across samples

Usage

plot_QC_sample_signal_boxplot(
  baf,
  sample_order = order(batch(baf, "sample")),
  color_tbl_s = NULL,
  main = deparse(substitute(baf)),
  xlab = "Sample (sorted)",
  ylab = "Signal Intensity",
  ...
)

plot_QC_sample_signal_boxplot.SBA(
  baf,
  sample_order = order(batch(baf, "sample")),
  color_tbl_s = default_color_SBA_ctrl_samples(sid(baf)),
  main = paste(unique(batch(baf, "binder")), collapse = ", "),
  xlab = "Sample (sorted)",
  ylab = "Raw MFI",
  ...
)

Arguments

baf	an object of the BAf-class
sample_order	the order of sample in plots. The default is the order by sample batch in order to easily check batch differences.
color_tbl_s	colors of samples on the plot. The information should be provided as a data.frame that has name, reg (regular expression to find the sample), col (color), type (negative or replicated). If this is NULL, then no coloring is applied.
main, xlab, ylab, ...	same as boxplot

Value

a list of the "color_tbl_s"

Functions

• plot_QC_sample_signal_boxplot.SBA: when baf has the data from suspension bead arrays

Author(s)

Mun-Gwan Hong <[e-mail]>

Examples

data(sba)
plot_QC_sample_signal_boxplot(sba)

Rundmus/BAf-R_package documentation built on May 18, 2020, 12:59 p.m.