RunAdaUMAP: RunAdaUMAP

In RuzhangZhao/savis: Single-cell rna-seq Adaptive VISualization (SAVIS)

RunAdaUMAP

Description

Use Adaptive Distance Metric to Run UMAP

Usage

RunAdaUMAP(
  X,
  metric = "euclidean",
  metric_count = 1,
  py_envir = globalenv(),
  n.neighbors = 30L,
  n.components = 2L,
  n.epochs = NULL,
  learning.rate = 1,
  min.dist = 0.3,
  spread = 1,
  set.op.mix.ratio = 1,
  local.connectivity = 1L,
  repulsion.strength = 1,
  negative.sample.rate = 5,
  a = 1.8956,
  b = 0.8006,
  uwot.sgd = FALSE,
  seed.use = 42L,
  metric.kwds = NULL,
  angular.rp.forest = FALSE,
  verbose = FALSE
)

Arguments

X	sds
metric	= 'euclidean',
metric_count	= 1,
py_envir	= globalenv(),
n.neighbors	= 30L,
n.components	= 2L,
n.epochs	= NULL,
learning.rate	= 1.0,
min.dist	= 0.3,
spread	= 1.0,
set.op.mix.ratio	= 1.0,
local.connectivity	= 1L,
repulsion.strength	= 1,
negative.sample.rate	= 5,
a	= 1.8956,
b	= 0.8006,
uwot.sgd	= FALSE,
seed.use	= 42L,
metric.kwds	= NULL,
angular.rp.forest	= FALSE,
verbose	= FALSE

Details

This function argument to the function

Value

nothing useful

Examples

a<-1

RuzhangZhao/savis documentation built on June 30, 2023, 10:48 p.m.