adjustUMAP: adjustUMAP

In RuzhangZhao/savis: Single-cell rna-seq Adaptive VISualization (SAVIS)

adjustUMAP

Description

Adjust UMAP to deal with distortion

Usage

adjustUMAP(
  pca_embedding,
  umap_embedding,
  cluster_label = NULL,
  global_umap_embedding = NULL,
  adjust_method = "umap",
  distance_metric = "euclidean",
  scale_factor = 0.9,
  rotate = TRUE,
  density_adjust = TRUE,
  shrink_distance = TRUE,
  shrink_factor = 0.2,
  seed.use = 42,
  min_size = 100,
  maxit_push = NULL
)

Arguments

expr_matrix

character

Details

amazing umap

Value

nothing useful

Examples

a<-1

RuzhangZhao/savis documentation built on June 30, 2023, 10:48 p.m.