adjustUMAP_via_umap: ScaleFactor

In RuzhangZhao/savis: Single-cell rna-seq Adaptive VISualization (SAVIS)

ScaleFactor

Description

Combined PC embedding with scale factor for subPC

Usage

adjustUMAP_via_umap(
  pca_embedding,
  umap_embedding,
  cluster_label,
  global_umap_embedding = NULL,
  distance_metric = "euclidean",
  scale_factor = 0.9,
  rotate = TRUE,
  density_adjust = TRUE,
  seed.use = 42,
  min_size = 100,
  maxit_push = NULL
)

Examples

a<-1

RuzhangZhao/savis documentation built on June 30, 2023, 10:48 p.m.