RunPreSAVIS: RunPreSAVIS

In RuzhangZhao/savis: Single-cell rna-seq Adaptive VISualization (SAVIS)

RunPreSAVIS

Description

savis: single-cell RNAseq adaptive visualiztaion

Usage

RunPreSAVIS(
  object,
  hvg_method = NULL,
  distance_metric = "euclidean",
  cluster_method = "louvain",
  resolution = 0.1,
  resolution_sub = 0,
  adaptive = TRUE,
  max_stratification = 3,
  scale_factor_separation = 3,
  process_min_size = NULL,
  process_min_count = NULL,
  check_differential = FALSE,
  verbose = TRUE,
  show_cluster = FALSE,
  return_cluster = FALSE,
  verbose_more = FALSE
)

Arguments

object	sdsd
distance_metric	The default is "euclidean".
cluster_method	The default is "louvain". User can choose from c("louvain","spectral"). But "louvain" performs much better.
resolution	The resolution for The default is 0.5.
resolution_sub	The default is 0.
max_stratification	The default is 3.
scale_factor_separation	The default is 3.
process_min_size	The default is NULL.
process_min_count	The default is NULL.
check_differential	The default is FALSE.
verbose	The default is TRUE.
show_cluster	The default is FALSE.
return_cluster	The default is FALSE.
verbose_more	The default is FALSE.
assay_for_var_features	sds

Details

This function argument to the function

Value

nothing useful

Examples

a<-1

RuzhangZhao/savis documentation built on June 30, 2023, 10:48 p.m.