Man pages for SESman/rbl
Biologging tools for diving predators in R
| agl_mean | Angle average |
| agl_rescale | Rescale angle to [-pi; pi] |
| as.bsm | General S3 utils for bsm objects |
| as.data.frame.bsm | Coerce brokenstick model to data.frame |
| as.ses | Creates or tests for 'ses'. |
| at_ker | Test if animal is located around Kerguelen |
| axisPOSIXct | Draw a correct axis for POSIXct objects |
| biolum_events | Identify potential bioluminescence emission events |
| BioPIC | BioPIC: bioluminescent event detection tool |
| biopic.qr | BioPIC QR decomposition on a TDR sample |
| bottom_delim | Find the dives' bottom start and end |
| bottom_delim_bsm | Delimitate bottom phase of dive using brokenstick models |
| bottom_delim_halsey | Delimitate bottom phase of dive using wiggles and steps |
| bottom_delim_std | Delimitate bottom phase of dive using depth threshold |
| bottom_delim_vspd | Delimitate bottom phase of dive using vertical speed... |
| broadness_index | Broadness index |
| brokenstick | Fitting brokenstick models |
| bsmfit | Fitter function for brokenstick models |
| check_nomtch | Deal with missing periods |
| coef.bsm | Extract brokenstick models coefficients |
| compose | Function composition |
| correct_depth | Correct depth sequence from drift of values over time |
| correct_duplicated_time | Fix duplicates in TDR time stamps |
| correct_time | Fix jumps and duplicates in TDR time stamps |
| curry | Curry |
| delta | Compute difference between extremes in a set of observations |
| depth_consistency_index | Depth consistency index between two dives |
| depth_range_index | Depth Range Index |
| df_search | Search recurssively to a data.frame |
| dive_delim | Find the dives start and end |
| dive_zone_index | Compute goodness of fit of brokenstick models: Dive Zone... |
| drift_stat | Use brokensticks to identify potential drifts |
| dynamic_acc | Dynamic (Body) acceleration DBA |
| eco.mem | Subset the slots of bsm objects |
| elt_delim | Extract indices corresponding to a symbol from a "delim"... |
| entropy | Shannon entropy index on time at depth proportions |
| exp10 | Reciprocal function of base::log10 |
| exses | An tiny dataset (about 10 days) of an SES equipped with an... |
| first | Return first or last element of a list of vector |
| flatten_list | Flatten a list |
| floorPOSIXct | floorPOSIXct |
| front | Add averaged oceonagraphic fronts to an existing plot |
| gcd | Greatest Common Divisor |
| grapes-bw-grapes | Special operator to test if numeric values belong to a given... |
| grapes-c-grapes | Operator for function composition |
| grapes-else-grapes | Else special operator |
| grapes-w-slash-i-grapes | x with(in/out) y |
| ind | Set and get the current individual |
| is_day | Use time and location to find if events occured during the... |
| is_dive_truncated | Check if a dive profile is complete or truncated |
| is.error | is.error |
| is.injective | Check if f: X -> Y is injective |
| isobath | Add isobaths to an existing plot (Kerguelen area) |
| is.POSIXct | is.POSIXct |
| kerbathy | Bathymetry of the Kerguelen area |
| li | Linear interpolation |
| list_depth | Depth of an R object |
| max_dist_cost | Cost functions for automatic brokenstick models. |
| max_residual | Get the maximun residual of a BSM at a given iteration |
| min_n | Create a function that return a result if number of valid obs... |
| nearly_equal | Vectorized predicate for near equality testing of numerics |
| nNA | Count the number of NAs in a vector |
| no_interpreter | Subset dive numbers with values as using indices |
| nstr | nstr |
| numIn | Extract numbers in character strings |
| nUN | Count the number of unique values in a vector |
| optBrokenstick | Fitting automatic brokenstick models |
| overall_DBA | Overall Dynamic Body Acceleration (ODBA) |
| pca_count | Count the number of Prey Catch Attemps (PCA) |
| per | Decompose an atomic vector to its successive values and their... |
| pitch | Attitude angles from static accelation |
| plot.bsm | Plot brokenstick models |
| plot.dzi | Plot method for "dzi" objects |
| plot.tdr | plot for TDR data |
| pmean | pmean |
| predict.bsm | Brokenstick model predictions |
| prey_catch_attempts | Identify Prey Catch attempts |
| print.bsm | Print method for bsm objects |
| print.dzi | Print method for dzi objects |
| prof | Compute temperature profile from TDR recordings |
| read.wcih | Import data from Wildlife Computers ".tab" text files |
| replaceMissing | Replace values in an atomic vector. |
| rescale | Scale a series between two values |
| residuals.bsm | Extract brokenstick model residuals |
| resize | Resize an individual |
| rollapply | Apply a function along a vector or a list |
| SI_light | Convert Wildlife Computers light values from/to linear W/cm^2... |
| sofronts | Southern ocean climatologic fronts |
| static_acc | Static acceleration |
| straightness | Compute straightness index |
| summary.bsm | Print summary of a brokenstick model |
| sunPos | sunPos |
| sun_position | Compute sun azimuth and elevation given a location and a... |
| swimming_effort | Compute swimming effort |
| symmetry_index | Dive/bottom symmetry index |
| tdrexpand | Expand a summary variable to the length of TDR data |
| tdrply | Apply function to subsets of a TDR dataset |
| time_at_depth | Compute the Time Allocation at Depth (TAD) index of a dive |
| time_reso | Sampling rate of a TDR dataset |
| transp | Color helpers |
| ty_delim | Extract indices from "delim" table using a regexp-like syntax |
| ty_interpreter | Get detailed parse information from "ty" regular expressions |
| update.bsm | Update and Re-fit a brokenstick model |
| upd_warn | Update warning column in delim table |
| vectorial_DBA | Vectorial Dynamic Body Acceleration (VeDBA) |
| which.bw | Match values against a data.frame with start and end values |
| which.dive | Find to which specific dive/surface a instant belongs to |
| which.row | from time stamp to row number |
| which.stick | To which brokenstick segment a point belongs to ? |
| wiggles | Count/Extract wiggles in 2D dataset. |
