Description Usage Arguments Details Value Examples

`drift_stat`

takes an object and return a data frame of all the brokenstick
segments along the trip with statistics such as their vertical speed (average
and standard deviation), their duration and so on. This data frame is to be
filtered to identify drift segments.

1 | ```
drift_stat(object, thres.bsm = 5, bsm = NULL)
``` |

`object` |
a |

`thres.bsm` |
a threshold to use with |

`bsm` |
A list of brokenstick models to use directly instead of computing a
new one with |

To get average pitch and roll angles (degrees), the TDR table must include
static acceleration with variable names "axG", "ayG" and "azG". Similarly, for
swimming effort and PCA rate, the TDR table must have columns "swm_eff" (numeric)
and "is_pca" (logical). Use functions `static_acc`

,
`swimming_effort`

and `prey_catch_attempts`

to compute
these variables from the raw acceleration readings.

A data frame of all brokenstick segments with start and end index of the segment, no_seg_tot and ID number of the segement, no_seg_dive the number of the segment within its dive, no_dive the ID of the dive conataining the segment, time the starting time of segment, drift_rate the vertical speed of the segment, dur the duration of the segment, min_depth and max_depth the minimum and maximum depths of the segment, acceleration statistics (if acceleration data available) average roll, pitch and swimming effort and PCA rate, the mean squared residuals of the segment.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 | ```
data(exses)
ind(exses)
exses$drift <- drift_stat(exses)
# Filter drift segments from drift_stat output table
is_drift <- with(exses$drift, dur >= 100 & drift_rate %bw% c(-0.4, 0.6) & abs(roll) >= 90)
tmp <- exses$drift[is_drift, ]
# Time series are good way to check drift segments selection
plot(drift_rate ~ time, tmp, ylim = c(-0.4, 0.6))
# Various ways to save result to slots of exses
exses$drift <- tmp
exses$no_drift_dive <- unique(tmp$no_dive)
exses$tdr$is_drift <- tdrexpand(rep(TRUE, nrow(tmp)), ty = tmp, na_value = FALSE)
exses$stat$is_drift <- exses$stat$no_dive %in% exses$no_drift_dive
# Plot a sample
par(mfrow = c(3,3))
no_drft <- sample(exses$no_drift_dive, 9, replace = FALSE)
tdrply(plot, c("time", "depth", "is_drift"), no = no_drft, la = list(main = no_drft))
par(mfrow = c(1,1))
``` |

SESman/rbl documentation built on June 24, 2017, 8:48 a.m.

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