agl_mean | Angle average |
agl_rescale | Rescale angle to [-pi; pi] |
as.bsm | General S3 utils for bsm objects |
as.data.frame.bsm | Coerce brokenstick model to data.frame |
as.ses | Creates or tests for 'ses'. |
at_ker | Test if animal is located around Kerguelen |
axisPOSIXct | Draw a correct axis for POSIXct objects |
biolum_events | Identify potential bioluminescence emission events |
BioPIC | BioPIC: bioluminescent event detection tool |
biopic.qr | BioPIC QR decomposition on a TDR sample |
bottom_delim | Find the dives' bottom start and end |
bottom_delim_bsm | Delimitate bottom phase of dive using brokenstick models |
bottom_delim_halsey | Delimitate bottom phase of dive using wiggles and steps |
bottom_delim_std | Delimitate bottom phase of dive using depth threshold |
bottom_delim_vspd | Delimitate bottom phase of dive using vertical speed... |
broadness_index | Broadness index |
brokenstick | Fitting brokenstick models |
bsmfit | Fitter function for brokenstick models |
check_nomtch | Deal with missing periods |
coef.bsm | Extract brokenstick models coefficients |
compose | Function composition |
correct_depth | Correct depth sequence from drift of values over time |
correct_duplicated_time | Fix duplicates in TDR time stamps |
correct_time | Fix jumps and duplicates in TDR time stamps |
curry | Curry |
delta | Compute difference between extremes in a set of observations |
depth_consistency_index | Depth consistency index between two dives |
depth_range_index | Depth Range Index |
df_search | Search recurssively to a data.frame |
dive_delim | Find the dives start and end |
dive_zone_index | Compute goodness of fit of brokenstick models: Dive Zone... |
drift_stat | Use brokensticks to identify potential drifts |
dynamic_acc | Dynamic (Body) acceleration DBA |
eco.mem | Subset the slots of bsm objects |
elt_delim | Extract indices corresponding to a symbol from a "delim"... |
entropy | Shannon entropy index on time at depth proportions |
exp10 | Reciprocal function of base::log10 |
exses | An tiny dataset (about 10 days) of an SES equipped with an... |
first | Return first or last element of a list of vector |
flatten_list | Flatten a list |
floorPOSIXct | floorPOSIXct |
front | Add averaged oceonagraphic fronts to an existing plot |
gcd | Greatest Common Divisor |
grapes-bw-grapes | Special operator to test if numeric values belong to a given... |
grapes-c-grapes | Operator for function composition |
grapes-else-grapes | Else special operator |
grapes-w-slash-i-grapes | x with(in/out) y |
ind | Set and get the current individual |
is_day | Use time and location to find if events occured during the... |
is_dive_truncated | Check if a dive profile is complete or truncated |
is.error | is.error |
is.injective | Check if f: X -> Y is injective |
isobath | Add isobaths to an existing plot (Kerguelen area) |
is.POSIXct | is.POSIXct |
kerbathy | Bathymetry of the Kerguelen area |
li | Linear interpolation |
list_depth | Depth of an R object |
max_dist_cost | Cost functions for automatic brokenstick models. |
max_residual | Get the maximun residual of a BSM at a given iteration |
min_n | Create a function that return a result if number of valid obs... |
nearly_equal | Vectorized predicate for near equality testing of numerics |
nNA | Count the number of NAs in a vector |
no_interpreter | Subset dive numbers with values as using indices |
nstr | nstr |
numIn | Extract numbers in character strings |
nUN | Count the number of unique values in a vector |
optBrokenstick | Fitting automatic brokenstick models |
overall_DBA | Overall Dynamic Body Acceleration (ODBA) |
pca_count | Count the number of Prey Catch Attemps (PCA) |
per | Decompose an atomic vector to its successive values and their... |
pitch | Attitude angles from static accelation |
plot.bsm | Plot brokenstick models |
plot.dzi | Plot method for "dzi" objects |
plot.tdr | plot for TDR data |
pmean | pmean |
predict.bsm | Brokenstick model predictions |
prey_catch_attempts | Identify Prey Catch attempts |
print.bsm | Print method for bsm objects |
print.dzi | Print method for dzi objects |
prof | Compute temperature profile from TDR recordings |
read.wcih | Import data from Wildlife Computers ".tab" text files |
replaceMissing | Replace values in an atomic vector. |
rescale | Scale a series between two values |
residuals.bsm | Extract brokenstick model residuals |
resize | Resize an individual |
rollapply | Apply a function along a vector or a list |
SI_light | Convert Wildlife Computers light values from/to linear W/cm^2... |
sofronts | Southern ocean climatologic fronts |
static_acc | Static acceleration |
straightness | Compute straightness index |
summary.bsm | Print summary of a brokenstick model |
sunPos | sunPos |
sun_position | Compute sun azimuth and elevation given a location and a... |
swimming_effort | Compute swimming effort |
symmetry_index | Dive/bottom symmetry index |
tdrexpand | Expand a summary variable to the length of TDR data |
tdrply | Apply function to subsets of a TDR dataset |
time_at_depth | Compute the Time Allocation at Depth (TAD) index of a dive |
time_reso | Sampling rate of a TDR dataset |
transp | Color helpers |
ty_delim | Extract indices from "delim" table using a regexp-like syntax |
ty_interpreter | Get detailed parse information from "ty" regular expressions |
update.bsm | Update and Re-fit a brokenstick model |
upd_warn | Update warning column in delim table |
vectorial_DBA | Vectorial Dynamic Body Acceleration (VeDBA) |
which.bw | Match values against a data.frame with start and end values |
which.dive | Find to which specific dive/surface a instant belongs to |
which.row | from time stamp to row number |
which.stick | To which brokenstick segment a point belongs to ? |
wiggles | Count/Extract wiggles in 2D dataset. |
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