BioPIC: BioPIC: bioluminescent event detection tool

In SESman/rbl: Biologging tools for diving predators in R

Description

Adaptation of BioPIC method with 1 Hz sampling frequency datasets and of post-peak attenuation (related to sensor and not depth)

Usage

BioPIC(x, lightSI.nm = "light_si", nms = c("alpha", "lessK", "Ia"))

Arguments

x	a TDR data sample
lightSI.nm	The name of the TDR column with light values in W/cm^2.
nms	The names of the output variables.

References

Vacquie-Garcia, J., Royer, F., Dragon, A.-C., Viviant, M., Bailleul, F. & Guinet, C. (2012) Foraging in the Darkness of the Southern Ocean: Influence of Bioluminescence on a Deep Diving Predator. PLoS ONE, 7, e43565.

Examples

data(exses)
dv <- tdrply(identity, no = 100, obj = exses)[[1]]
dv$light_si <- SI_light(dv$light)
biolum_tbl <- BioPIC(dv)

SESman/rbl documentation built on May 9, 2019, 11:10 a.m.