Files in SOLV-Code/RapidRicker
Rapid spawner-recruit data quality checks and sensitivity tests of standard biological benchmarks.
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/FUNCTION_BiolBM_Subroutines_OtherBM.R
R/FUNCTION_BiolBM_Subroutines_Sgen.R
R/FUNCTION_BiolBM_Subroutines_Smsy.R
R/FUNCTION_LognormalCapacityPriorFunctions.R
R/FUNCTION_PlotRanking.R
R/FUNCTION_PlotTornado.R
R/FUNCTION_RapidRicker.R
R/FUNCTION_RickerHelpers.R
R/FUNCTION_RickerProxy.R
R/FUNCTION_VariousPlottingFunctions.R
R/FUNCTION_VariousSparkPlots.R
R/FUNCTION_amendMCMC.R
R/FUNCTION_calcDetModelFit.R
R/FUNCTION_calcDetRickerBM.R
R/FUNCTION_calcMCMCModelFit.R
R/FUNCTION_calcMCMCRickerBM.R
R/FUNCTION_checkSRData.R
R/FUNCTION_compareBiasCorr.R
R/FUNCTION_doRJAGS.R
R/FUNCTION_generateInits.R
R/FUNCTION_generatePriors.R
R/FUNCTION_testDetRickerBM.R
R/SUB_utils.R
R/data.R
README.md
RapidRicker.Rproj
TestingScripts/Sample_SR_InputFile.csv
TestingScripts/TestingDet_lm_vs_gls.R
TestingScripts/TestingMCMC_AR1Ricker.R
TestingScripts/TestingMCMC_BasicRicker.R
TestingScripts/TestingMCMC_KalmanRicker.R
TestingScripts/Testing_ReadMeExamples.R
TestingScripts/Testing_WorkedExamples.R
data/SR_Sample.RData
data/flags_default.RData
data/gls_test_data.RData
inst/BUILT_IN_MODEL_RickerAR1_LognormalCapPrior.txt
inst/BUILT_IN_MODEL_RickerAR1_UniformCapPrior.txt
inst/BUILT_IN_MODEL_RickerKalman_LognormalCapPrior.txt
inst/BUILT_IN_MODEL_RickerKalman_UniformCapPrior.txt
inst/BUILT_IN_MODEL_Ricker_LognormalCapPrior.txt
inst/BUILT_IN_MODEL_Ricker_UniformCapPrior.txt
inst/OLD_BUILT_IN_MODEL_Ricker_BUGS.txt
inst/OLD_Backup_Ricker_BUGS.txt
inst/OLD_ricker_TimeVaryingAlpha_BUGS.txt
inst/x_BUILT_IN_MODEL_RickerAR1_BUGS.txt
inst/x_BUILT_IN_MODEL_RickerAltBiasCorr_BUGS.txt
man/RapidRicker.Rd
man/SR_Sample.Rd
man/amendMCMC.Rd
man/box_add.Rd
man/calcDetModelFit.Rd
man/calcDetRickerBM.Rd
man/calcLognormalTauFromCV.Rd
man/calcMCMCModelFit.Rd
man/calcMCMCRickerBM.Rd
man/calcRickerOtherBM.Rd
man/calcRickerProxy.Rd
man/calcRickerSgen.Rd
man/calcRickerSmsy.Rd
man/checkSRData.Rd
man/compareBiasCorr.Rd
man/doRJAGS.Rd
man/flags_default.Rd
man/generateInits.Rd
man/generatePriors.Rd
man/gls_test_data.Rd
man/include.dependencies.Rd
man/plotRanking.Rd
man/plotRickerProxy.Rd
man/plotTornado.Rd
man/ricker.array.Rd
man/spark.line.Rd
man/testDetRickerBM.Rd
