calcMCMCRickerBM: calcMCMCRickerBM

In SOLV-Code/RapidRicker: Rapid spawner-recruit data quality checks and sensitivity tests of standard biological benchmarks.

calcMCMCRickerBM

Description

This function calculates calculates standard biological benchmarks (Smsy, Seq, Smax, Umsy), applying the subroutines calcRickerSmsy, calcRickerSgen, and calcRickerOtherBM with user-specified settings.

Usage

calcMCMCRickerBM(
  fit_obj,
  sr.scale = 10^6,
  Smsy.method = "Scheuerell2016",
  Sgen.method = "Connorsetal2022",
  drop.resids = TRUE
)

Arguments

fit_obj	a list object are not used (RpS, Qual, ExpF etc)
sr.scale	one of "HoltOgden2013", "samSim", "Connorsetal2022","BruteForce". Default is "Connorsetal2022"
Smsy.method	one of "Hilborn1985","Petermanetal2000","Scheuerell2016","BruteForce". Default is "Scheuerell2016".
drop.resids	if TRUE, exclude the annual residuals from the output

Examples

ricker.bm <- calcMCMCRickerBM(SR_Sample[SR_Sample$Stock == "Stock1",],min.obs = 10)
print(ricker.bm)

SOLV-Code/RapidRicker documentation built on Jan. 14, 2025, 9:36 a.m.