calcDetRickerBM: calcDetRickerBM

In SOLV-Code/RapidRicker: Rapid spawner-recruit data quality checks and sensitivity tests of standard biological benchmarks.

calcDetRickerBM

Description

This function calculates standard biological benchmarks (Smsy, Seq, Smax, Umsy), for the deterministic model fits applying the subroutines calcRickerSmsy, calcRickerSgen, and calcRickerOtherBM with user-specified settings.

Usage

calcDetRickerBM(
  fit_obj,
  sr.scale = 10^6,
  Smsy.method = "Scheuerell2016",
  Sgen.method = "Connorsetal2022"
)

Arguments

fit_obj	a list object are not used (RpS, Qual, ExpF etc)
sr.scale	one of "HoltOgden2013", "samSim", "Connorsetal2022","BruteForce". Default is "Connorsetal2022"
Smsy.method	one of "Hilborn1985","Petermanetal2000","Scheuerell2016","BruteForce". Default is "Scheuerell2016".
sr_obj	a data frame with Year and Spn, logRpS , and Rec (Data for 1 Stock!). Other variables can be there but are not used (RpS, Qual, ExpF etc)
min.obs	min number of S-R pairs needed to fit a model
resids	if TRUE, add the residuals to the output

Examples

ricker.bm <- calcDetRickerBM(SR_Sample[SR_Sample$Stock == "Stock1",],min.obs = 10)
print(ricker.bm)

SOLV-Code/RapidRicker documentation built on Jan. 14, 2025, 9:36 a.m.