RapidRicker: RapidRicker

In SOLV-Code/RapidRicker: Rapid spawner-recruit data quality checks and sensitivity tests of standard biological benchmarks.

RapidRicker

Description

This function is a wrapper for testDetRickerBM(). It loops throug multiple stocks and applies all the sensitivity test variations, then calculates the perc differences to base case. For calculation details, refer to calcDetRickerBM and testDetRickerBM.

Usage

RapidRicker(
  sr_obj_m,
  min.obs = 10,
  trace = TRUE,
  flags = NULL,
  data.check = TRUE,
  bm.test = TRUE,
  sr.scale = 10^6
)

Arguments

sr_obj_m	a data frame with Stock, Year and Spn, logRpS (Data for multiple stocks!). Other variables can be there but are not used (RpS, Qual, ExpF etc).
min.obs	min number of S-R pairs needed to fit a model
trace	if TRUE, print various intermediate diagnostic output to the console
flags	a data frame with Label, Lower, Upper. Lower and Upper define the triggers for values to be flagged. Labels have to match the criteria used in the function(LIST). If flags = NULL, then it uses the built-in object flags_default.
data.check	if TRUE, do the data check (either data.check or bm.test or both must be true!)
bm.test	if TRUE, do the benchmark sensitivity tests (either data.check or bm.test or both must be true!)

Examples

rapid.ricker.out <- RapidRicker(SR_Sample,min.obs = 10,  trace=FALSE)

SOLV-Code/RapidRicker documentation built on Jan. 14, 2025, 9:36 a.m.