checkSRData: checkSRData

In SOLV-Code/RapidRicker: Rapid spawner-recruit data quality checks and sensitivity tests of standard biological benchmarks.

checkSRData

Description

This function calculates a set of diagnostics for the spawner-recruit data. Some apply to the whole series (e.g. the contrast is spawner estimates), while others flag individual observations (e.g. R/S above user-specified plausible upper bound, pointing to a potential data error in either R or S).

Usage

checkSRData(sr_obj, flags = NULL, trace = FALSE)

Arguments

sr_obj	a data frame with Year, Spn, Rec, and optionally SpnExp and RecAge#. (Data for 1 Stock!). Other variables can be there but are not used.
flags	a data frame with Label, Lower, Upper. Lower and Upper define the triggers for values to be flagged. Labels have to match the criteria used in the function(LIST). The built-in object flags_default has is a template.
trace	if TRUE, print various intermediate details to the screen

Examples

data.chk <- checkSRData(SR_Sample[SR_Sample$Stock == "Stock1",])
print(data.chk)

SOLV-Code/RapidRicker documentation built on Jan. 14, 2025, 9:36 a.m.