API for SRenan/XCIR
XCI-inference

Global functions
.back_sel Source code
.check_model Source code
.getAI Source code Source code
.getGenicAll Source code
.getGenicMostExp Source code
.getSkewedSamples Source code
.getTopSNPs Source code
.logLH0_c Source code
.logLH1_c Source code
.logL_M0 Source code
.logL_M1 Source code
.logL_M2 Source code
.logL_MF Source code
.makeDTFromGeno Source code Source code
.pbb_midp Source code
.pos2gene Source code
.select_snps Source code
.seqm_anno Source code
.write_siteRef Source code
M0 Source code
M1 Source code
M2 Source code
MF Source code
XCIR Man page
XCIR-package Man page
addAnno Man page Source code
annotateX Man page Source code
annotates_snps Man page Source code
betaBinomXI Man page Source code
betaParam Man page
consensusXCI Man page Source code
dbb Source code
fitXCIR Source code
getGenicDP Man page Source code
getXCIstate Man page Source code
ldbb Source code
mart_genes Man page Source code
plotQC Man page Source code
plot_escape_fraction Source code
readRNASNPs Man page Source code
readVCF4 Man page Source code
readXCI Man page Source code
readXVcf Man page Source code
sample_clean Man page Source code
xci_calls Man page Source code
xci_qc Man page Source code
xcir_clean Source code
SRenan/XCIR documentation built on Oct. 8, 2021, 3:11 a.m.