mart_genes: biomaRt genes
In SRenan/XCIR: XCI-inference
Description
Usage
Arguments
Value
Examples
Description
Extract gene informations from biomaRt
Usage
1
mart_genes(release = "hg38", chr = "X", mirror = NULL)
Arguments
release
A character. Genome release name. Valid releases are
"hg19", "hg38".
chr
A character or NULL. If specified, only the genes
from the specified chromosomes will be returned.
mirror
A character. Passed to useEnsembl.
Value
A data.table with the gene symbol, start and end position
and matching ensembl transcripts.
Examples
1
2
3
4
#Chromosome X, hg19
egX <- mart_genes("hg19", mirror = "useast")
#Full genome, latest release
eg <- mart_genes("hg38", mirror = "useast")
SRenan/XCIR documentation built on Oct. 8, 2021, 3:11 a.m.
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Description Usage Arguments Value Examples
Description
Extract gene informations from biomaRt
Usage
1 | mart_genes(release = "hg38", chr = "X", mirror = NULL)
|
Arguments
release |
A |
chr |
A |
mirror |
A |
Value
A data.table with the gene symbol, start and end position
and matching ensembl transcripts.
Examples
1 2 3 4 | #Chromosome X, hg19
egX <- mart_genes("hg19", mirror = "useast")
#Full genome, latest release
eg <- mart_genes("hg38", mirror = "useast")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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