Files in SRenan/XCIR
XCI-inference
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/XCIR.R
R/annotate.R
R/betabin.R
R/getGenic.R
R/lrt.R
R/models.R
R/readXvcf.R
R/read_nophase.R
R/utils.R
README.md
inst/examples/betaBinomXI.R
inst/examples/workflow.R
inst/extdata/13293_2015_53_MOESM1_ESM.xlsx
inst/extdata/AD_example.vcf
inst/extdata/GEU_xcistate_181122.tsv
inst/extdata/data2_vignette.tsv
inst/extdata/data34_vignette.tsv
inst/extdata/xciGene.txt
inst/extdata/xciGenes_cotton.txt
inst/extdata/xcig_vignette.txt
man/BetaConversion.Rd
man/XCIR-package.Rd
man/addAnno.Rd
man/annotateX.Rd
man/annotates_snps.Rd
man/betaBinomXI.Rd
man/consensusXCI.Rd
man/getGenicDP.Rd
man/getXCIstate.Rd
man/mart_genes.Rd
man/plotQC.Rd
man/readRNASNPs.Rd
man/readVCF4.Rd
man/readXCI.Rd
man/readXVcf.Rd
man/sample_clean.Rd
man/xci_calls.Rd
man/xci_qc.Rd
manuscript/hg37_disjoint_E.bed
manuscript/hg37_disjoint_Intergenic.bed
manuscript/hg37_disjoint_NoCall.bed
manuscript/hg37_disjoint_S.bed
manuscript/hg37_disjoint_VE.bed
manuscript/hg37_disjoint_Yhomolog.bed
unusedcode/covariate_regression.R
unusedcode/getError.R
unusedcode/new_anno.R
unusedcode/readXvcf.R
unusedcode/reading_functions.R
unusedcode/s4_xcir.R
unusedcode/underdev.R
unusedcode/variable_escape.R
vignettes/xcir_intro.Rmd
