Man pages for SRenan/XCIR
XCI-inference
| addAnno | Read annotation file |
| annotates_snps | Annotate |
| annotateX | Annotate |
| betaBinomXI | Fit mixture model |
| BetaConversion | Converting beta distribution parameters |
| consensusXCI | XCI consensus |
| getGenicDP | Get expression at the gene level |
| getXCIstate | Classify X-genes |
| mart_genes | biomaRt genes |
| plotQC | Plot QC |
| readRNASNPs | Read SNPs from RNA-Seq |
| readVCF4 | Read VCF file |
| readXCI | Read a list of known inactivated genes |
| readXVcf | Read a vcf file to extract information relevant to XCI |
| sample_clean | Sample estimates |
| xci_calls | Call XCI-states |
| xci_qc | Plot cell fraction estimates |
| XCIR-package | Estimating inactivated X chromosome expression |
