add_logratios: Add logratios
In SWittouck/tidyamplicons: Functions to Manipulate and Visualize Amplicon Abundance Data
add_logratios R Documentation
Add logratios
Description
This function computes pairwise logratio values between all taxa and adds
these to the tidyamplicons object in the form of a table called logratios.
Usage
add_logratios(ta, max_taxa = 30)
Arguments
ta
A tidyamplicons object
max_taxa
The maximum number of taxa to use
Details
If max_taxa is greater than the number of taxa, the taxa with the highest
occurrence will be selected.
IMPORTANT: this function add pseudocounts of one to all abundances before
calculating the logratios.
Value
A tidyamplicons object with an extra table logratios
SWittouck/tidyamplicons documentation built on Aug. 15, 2023, 3:14 a.m.
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| add_logratios | R Documentation |
Add logratios
Description
This function computes pairwise logratio values between all taxa and adds these to the tidyamplicons object in the form of a table called logratios.
Usage
add_logratios(ta, max_taxa = 30)
Arguments
ta |
A tidyamplicons object |
max_taxa |
The maximum number of taxa to use |
Details
If max_taxa is greater than the number of taxa, the taxa with the highest occurrence will be selected.
IMPORTANT: this function add pseudocounts of one to all abundances before calculating the logratios.
Value
A tidyamplicons object with an extra table logratios
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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