API for SWittouck/tidyamplicons
Functions to Manipulate and Visualize Amplicon Abundance Data

Global functions
add_alphas Man page Source code
add_cluster Man page Source code
add_diversity_measures Source code
add_lib_size Man page Source code
add_max_rel_abundance Source code
add_mean_rel_abundances Man page
add_pcoa Man page Source code
add_rel_abundance Man page Source code
add_rel_occurrence Source code
add_sample_clustered Man page Source code
add_sample_tibble Man page Source code
add_spike_ratio Man page Source code
add_taxon_name Source code
add_taxon_tibble Man page Source code
add_total_rel_abundance Source code
aggregate_samples Source code
aggregate_taxa Source code
as_abundances Man page
as_abundances_matrix Man page
as_phyloseq Man page
as_tidyamplicons Man page
bar_plot Source code
betas Man page Source code
change_id_samples Source code
change_id_taxa Source code
create_tidyamplicons Man page Source code
filter_abundances Source code
filter_samples Source code
filter_taxa Source code
get_betas Man page
get_rel_abundance_matrix Source code
history_plot Source code
merge_redundant_taxa Source code
merge_tidyamplicons Man page
mutate_abundances Source code
mutate_samples Source code
mutate_taxa Source code
numbers Man page Source code
process_abundance_selection Source code
process_new_sample_name Source code
process_sample_selection Source code
process_taxon_selection Source code
rank_names Source code
rarefy Source code
report_numbers Man page Source code
sample_plot Source code
select_abundances Source code
select_samples Source code
select_taxa Source code
set_rank_names Source code
tidyamplicons Man page
tidyamplicons-package Man page
trim_asvs Source code
update_lib_sizes Source code
update_tidyamplicons Man page
SWittouck/tidyamplicons documentation built on Aug. 12, 2019, 4:06 p.m.