API for SWittouck/tidyamplicons
Functions to Manipulate and Visualize Amplicon Count Data

Global functions
abundances Source code
add_diversity_measures Source code
add_jervis_bardy Source code
add_lib_size Source code
add_max_rel_abundance Source code
add_pcoa Source code
add_presence_counts Source code
add_rel_abundance Source code
add_rel_occurrence Source code
add_sample_clustered Source code
add_spike_ratio Source code
add_taxon_name Source code
add_taxon_name_color Source code
add_total_rel_abundance Source code
aggregate_samples Source code
aggregate_taxa Source code
as_abundances Source code
as_abundances_matrix Source code
as_phyloseq Source code
everything Source code
filter_abundances Source code
filter_samples Source code
filter_taxa Source code
get_bar_plot Source code
get_betas Source code
get_history_plot Source code
get_numbers Source code
get_rel_abundance_matrix Source code
make_tidyamplicons Source code
merge_redundant_taxa Source code
merge_tidyamplicons Source code
mutate_abundances Source code
mutate_samples Source code
mutate_taxa Source code
process_abundance_selection Source code
process_new_sample_name Source code
process_sample_selection Source code
process_taxon_selection Source code
report_numbers Source code
samples Source code
select_abundances Source code
select_samples Source code
select_taxa Source code
taxa Source code
taxon_counts_in_conditions Source code
tidy_phyloseq Source code
trim_asvs Source code
update_lib_sizes Source code
SWittouck/tidyamplicons documentation built on July 18, 2018, 2:09 a.m.