codifab_plot: Generate a compositional differential abundance plot
In SWittouck/tidyamplicons: Functions to Manipulate and Visualize Amplicon Abundance Data
codifab_plot R Documentation
Generate a compositional differential abundance plot
Description
This function returns a plot to visualize differential abundance of taxa
between conditions, compared to all other taxa as references. These
differential abundances should already have been calculated with
[add_codifab].
Usage
codifab_plot(ta, diffabun_var)
Arguments
ta
A tidyamplicons object
diffabun_var
The variable with differential abundances in the
taxon_pair table
Details
Significance of tests is determined by capping the false discovery rate at
10
non-independent tests. See [p.adjust].
Value
A ggplot object
SWittouck/tidyamplicons documentation built on Aug. 15, 2023, 3:14 a.m.
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| codifab_plot | R Documentation |
Generate a compositional differential abundance plot
Description
This function returns a plot to visualize differential abundance of taxa between conditions, compared to all other taxa as references. These differential abundances should already have been calculated with [add_codifab].
Usage
codifab_plot(ta, diffabun_var)
Arguments
ta |
A tidyamplicons object |
diffabun_var |
The variable with differential abundances in the taxon_pair table |
Details
Significance of tests is determined by capping the false discovery rate at 10 non-independent tests. See [p.adjust].
Value
A ggplot object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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