occurrences: Get occurrences of taxa in general or per condition
In SWittouck/tidyamplicons: Functions to Manipulate and Visualize Amplicon Abundance Data
occurrences R Documentation
Get occurrences of taxa in general or per condition
Description
Returns a tidy table of occurrences: taxon presence counts in samples,
overall or per condition.
Usage
occurrences(ta, condition = NULL, pres_abs = F)
Arguments
ta
a tidyamplicons object
condition
a string denoting a categorical variable in the sample table
pres_abs
wether to resort to presence/absense screening
Details
Condition should be a categorical variable present in the samples table.
Supply condition as a string.
SWittouck/tidyamplicons documentation built on Aug. 15, 2023, 3:14 a.m.
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| occurrences | R Documentation |
Get occurrences of taxa in general or per condition
Description
Returns a tidy table of occurrences: taxon presence counts in samples, overall or per condition.
Usage
occurrences(ta, condition = NULL, pres_abs = F)
Arguments
ta |
a tidyamplicons object |
condition |
a string denoting a categorical variable in the sample table |
pres_abs |
wether to resort to presence/absense screening |
Details
Condition should be a categorical variable present in the samples table. Supply condition as a string.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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