Sage-Bionetworks/SageBionetworksCoex: Gene Coexpression

Compute gene coexpression based on gene expression data. Output includes coexpression modules, diagnostic plots and supporting statistics. The package leverages the WGCNA package published to C-RAN by the UCLA Array Data Analysis Group, but includes parameter settings and custom functions to replicate the 'flavor' of the algorithm as executed at Sage Bionetworks. The entry point for the package is 'performCoexFromFiles()'.

Getting started

Package details

AuthorBruce Hoff
MaintainerSage Bionetworks Scientific Computing <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Sage-Bionetworks/SageBionetworksCoex documentation built on May 9, 2019, 12:11 p.m.