tomHeatmap: Tom Heatmap

Description Usage Arguments Details Value Author(s) References

Description

Creates a heat map of the topological overlap matrix (TOM), ordered according to the given dendrogram, with color-coded module membership along the margins

Usage

1
tomHeatmap(filePath, tomDist, geneDendrogram, geneModules)

Arguments

filePath

The folder and file into which the graphic output file is placed. The suffix indicates the type of file to create (jpg, pdf, png, or ps).

tomDist

Topological Overlap Matrix (TOM) expressed as a distance matrix, returned by clusterGenes()

geneDendrogram

The gene dendrogram, returned by clusterGenes()

geneModules

A vector of memberships, i.e. geneModules[i] is the module to which gene i belongs.

Details

The graph is created and placed into the file indicated by 'filePath'. This function works on Unix but not on Windows.

Value

No value is returned.

Author(s)

Bin Zhang

References

Zhang, B. & Horvath, S. (2005) Statistical Applications in Genetics and Molecular Biology 4, Article 17.


Sage-Bionetworks/SageBionetworksCoex documentation built on May 9, 2019, 12:11 p.m.