corHeatmap: Correlation Heatmap
In Sage-Bionetworks/SageBionetworksCoex: Gene Coexpression
Description
Usage
Arguments
Details
Value
Author(s)
References
Description
Creates a heat map of |cc|^beta, ordered according to the given dendrogram, with color-coded module membership along the margins
Usage
1
corHeatmap(filePath, dichotCor, geneDendrogram, geneModules)
Arguments
filePath
The folder and file into which the graphic output file is placed. The suffix indicates the type of file to create (jpg, pdf, png, or ps).
dichotCor
|cc|^beta (elementwise, where 'cc' is the matrix of inter-gene Pearson correlation coefficients) but with zero diagonal.
geneDendrogram
The gene dendrogram for the rows/columns of 'dichotCor'.
geneModules
A vector of memberships, i.e. geneModules[i] is the module to which gene i belongs.
Details
The graph is created and placed into the file indicated by 'filePath'. This function works on Unix but not on Windows.
Value
No value is returned.
Author(s)
Bin Zhang
References
Sage-Bionetworks/SageBionetworksCoex documentation built on May 9, 2019, 12:11 p.m.
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Description Usage Arguments Details Value Author(s) References
Description
Creates a heat map of |cc|^beta, ordered according to the given dendrogram, with color-coded module membership along the margins
Usage
1 | corHeatmap(filePath, dichotCor, geneDendrogram, geneModules)
|
Arguments
filePath |
The folder and file into which the graphic output file is placed. The suffix indicates the type of file to create (jpg, pdf, png, or ps). |
dichotCor |
|cc|^beta (elementwise, where 'cc' is the matrix of inter-gene Pearson correlation coefficients) but with zero diagonal. |
geneDendrogram |
The gene dendrogram for the rows/columns of 'dichotCor'. |
geneModules |
A vector of memberships, i.e. geneModules[i] is the module to which gene i belongs. |
Details
The graph is created and placed into the file indicated by 'filePath'. This function works on Unix but not on Windows.
Value
No value is returned.
Author(s)
Bin Zhang
References
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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