createNetwork: Create Network
In Sage-Bionetworks/SageBionetworksCoex: Gene Coexpression

Description Usage Arguments Value Author(s) References

Creates a data frame for the derived network, given the input data and the data objects for the coexpression results. As such this function is purely for data assembly, not for computation.

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createNetwork(expressionData,
				geneModules,
				intraModularStatistics)

`expressionData`	A normalized matrix of gene expression data, given as a data frame with rows as samples and columns as genes/probes.
`geneModules`	The module membership of each gene, as computed by modulesFromGeneTree()
`intraModularStatistics`	A data frame of intramodule gene statistics, returned by intraModularStatistics()

Returns a data frame with one row per gene and a column-concatenation of (a) the input data, (b) the intramodular statistics (as produced by intraModularStatistics()), (c) the gene-wise standard deviation of the input data, and (d) the gene module assignments.

Bin Zhang

Zhang, B. & Horvath, S. (2005) Statistical Applications in Genetics and Molecular Biology 4, Article 17.

Sage-Bionetworks/SageBionetworksCoex documentation built on May 9, 2019, 12:11 p.m.