Files in Sage-Bionetworks/snm

Supervised Normalization of Microarrays

R/buildBasisFunction.R R/buildBasisSplineMatrix.R R/calcArrayEffects.R R/calcSig.R R/calculate.nulls.R R/checkArguments.R R/downweight.outliers.R R/edge.fit.R R/edge.glr.R R/edge.qvalue.R R/err.msg.R R/f.pvalue.R R/fit.fast.model.R R/fit.model.R R/fit.pset.R R/fitted.snm.R R/get.coefs.R R/get.resids.R R/get.residual.rank.R R/getSpanningSet.R R/make.ref.model.matrices.R R/make.snm.obj.R R/make.sva.obj.R R/makeDataObject.R R/plot.snm.R R/qvalue.lfdr.R R/qvalue.pi0.R R/removeAdjustmentsVars.R R/rm.zero.cols.R R/sim.doubleChannel.R R/sim.function.var.R R/sim.intensity.dep.R R/sim.preProcessed.R R/sim.probe.specific.R R/sim.refDesign.R R/sim.singleChannel.R R/snm.R R/snm.diagnosticPlot.R R/summary.snm.R R/sva.R R/sva.diagnostic.plot.R eme.R fix.lme4.R inst/doc/Rplots.pdf inst/doc/snm.pdf man/buildBasisFunction.Rd man/buildBasisSplineMatrix.Rd man/calcArrayEffects.Rd man/calcSig.Rd man/calculate.nulls.Rd man/checkArguments.Rd man/constructNormalizedData.Rd man/edge.fit.Rd man/edge.glr.Rd man/edge.qvalue.Rd man/err.msg.Rd man/f.pvalue.Rd man/fit.fast.model.Rd man/fit.model.Rd man/fit.pset.Rd man/fitted.snm.Rd man/get.coefs.Rd man/get.resids.Rd man/getSpanningSet.Rd man/make.ref.model.matrices.Rd man/make.snm.obj.Rd man/makeDataObject.Rd man/plot.snm.Rd man/rm.zero.cols.Rd man/sim.doubleChannel.Rd man/sim.function.var.Rd man/sim.intensity.dep.Rd man/sim.preProcessed.Rd man/sim.probe.specific.Rd man/sim.refDesign.Rd man/sim.singleChannel.Rd man/snm-internal.Rd man/snm.Rd man/snm.diagnosticPlot.Rd man/summary.snm.Rd man/sva.Rd