Files in SchlossLab/mothuR
Schloss Lab Tools for Reproducible Microbiome Research
.Rbuildignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/CONTRIBUTING.md
.github/ISSUE_TEMPLATE/issue_template.md
.github/SUPPORT.md
.github/pull_request_template.md
.github/workflows/check.yaml
.github/workflows/on-release.yml
.github/workflows/pr_build.yml
.github/workflows/test-coverage.yml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/calculate.R
R/plot.R
R/read_dist.R
R/read_tax.R
R/reexports.R
R/rmd_helpers.R
R/schtools.R
R/shared.R
R/snakemake.R
R/utils.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
conda-env/schtools-dev.yml
cran-comments.md
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/CONTRIBUTING.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/SUPPORT.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/1F4A9_color.png
docs/articles/1F527_color.png
docs/articles/1F528_color.png
docs/articles/articles/1F4A9_color.png
docs/articles/articles/1F527_color.png
docs/articles/articles/1F528_color.png
docs/articles/articles/logo.html
docs/articles/articles/logo_files/figure-html/emojis-1.png
docs/articles/articles/logo_files/figure-html/logo-1.png
docs/articles/articles/logo_files/header-attrs-2.11/header-attrs.js
docs/articles/articles/poo-hammer.png
docs/articles/articles/schtools-logo.png
docs/articles/index.html
docs/articles/introduction.html
docs/articles/introduction_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/introduction_files/figure-html/italic-genus-1.png
docs/articles/introduction_files/figure-html/unnamed-chunk-2-1.png
docs/articles/introduction_files/header-attrs-2.10/header-attrs.js
docs/articles/introduction_files/header-attrs-2.11/header-attrs.js
docs/articles/logo.html
docs/articles/logo_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/logo_files/figure-html/emojis-1.png
docs/articles/logo_files/figure-html/logo-1.png
docs/articles/poo-hammer.png
docs/articles/schtools-logo.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.0/bootstrap.min.css
docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.3/bootstrap.min.css
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.2.2/bootstrap.min.css
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/dev/CODE_OF_CONDUCT.html
docs/dev/CONTRIBUTING.html
docs/dev/LICENSE-text.html
docs/dev/LICENSE.html
docs/dev/SUPPORT.html
docs/dev/apple-touch-icon-120x120.png
docs/dev/apple-touch-icon-152x152.png
docs/dev/apple-touch-icon-180x180.png
docs/dev/apple-touch-icon-60x60.png
docs/dev/apple-touch-icon-76x76.png
docs/dev/apple-touch-icon.png
docs/dev/articles/1F4A9_color.png
docs/dev/articles/1F527_color.png
docs/dev/articles/1F528_color.png
docs/dev/articles/articles/logo.html
docs/dev/articles/index.html
docs/dev/articles/introduction.html
docs/dev/articles/introduction_files/accessible-code-block-0.0.1/empty-anchor.js
docs/dev/articles/introduction_files/figure-html/italic-genus-1.png
docs/dev/articles/logo.html
docs/dev/articles/logo_files/accessible-code-block-0.0.1/empty-anchor.js
docs/dev/articles/logo_files/figure-html/emojis-1.png
docs/dev/articles/logo_files/figure-html/logo-1.png
docs/dev/articles/poo-hammer.png
docs/dev/articles/schtools-logo.png
docs/dev/authors.html
docs/dev/deps/bootstrap-5.1.0/bootstrap.bundle.min.js
docs/dev/deps/bootstrap-5.1.0/bootstrap.bundle.min.js.map
docs/dev/deps/bootstrap-5.1.0/bootstrap.min.css
docs/dev/deps/bootstrap-5.1.3/bootstrap.bundle.min.js
docs/dev/deps/bootstrap-5.1.3/bootstrap.bundle.min.js.map
docs/dev/deps/bootstrap-5.1.3/bootstrap.min.css
docs/dev/deps/bootstrap-5.2.2/bootstrap.bundle.min.js
docs/dev/deps/bootstrap-5.2.2/bootstrap.bundle.min.js.map
docs/dev/deps/bootstrap-5.2.2/bootstrap.min.css
docs/dev/deps/data-deps.txt
docs/dev/deps/jquery-3.6.0/jquery-3.6.0.js
docs/dev/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/dev/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/dev/favicon-16x16.png
docs/dev/favicon-32x32.png
docs/dev/favicon.ico
docs/dev/index.html
docs/dev/link.svg
docs/dev/logo.png
docs/dev/news/index.html
docs/dev/pkgdown.js
docs/dev/pkgdown.yml
docs/dev/pull_request_template.html
docs/dev/reference/Rplot001.png
docs/dev/reference/calc_relabun.html
docs/dev/reference/close_enough.html
docs/dev/reference/figures/logo.png
docs/dev/reference/format_number.html
docs/dev/reference/get_wildcards_tbl.html
docs/dev/reference/index.html
docs/dev/reference/inline_hook.html
docs/dev/reference/is_nearly_whole.html
docs/dev/reference/is_nondesc.html
docs/dev/reference/load_deps.html
docs/dev/reference/log_snakemake.html
docs/dev/reference/parse_tax.html
docs/dev/reference/paste_oxford_list.html
docs/dev/reference/pool_taxon_counts.html
docs/dev/reference/read_dist.html
docs/dev/reference/read_tax.html
docs/dev/reference/reexports.html
docs/dev/reference/schtools.html
docs/dev/reference/set_knitr_opts.html
docs/dev/reference/theme_lucas-1.png
docs/dev/reference/theme_lucas.html
docs/dev/reference/theme_sovacool-1.png
docs/dev/reference/theme_sovacool.html
docs/dev/search.json
docs/dev/sitemap.xml
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/pull_request_template.html
docs/reference/Rplot001.png
docs/reference/calc_relabun.html
docs/reference/close_enough.html
docs/reference/figures/logo.png
docs/reference/format_number.html
docs/reference/get_wildcards_tbl.html
docs/reference/index.html
docs/reference/inline_hook.html
docs/reference/is_nearly_whole.html
docs/reference/is_nondesc.html
docs/reference/load_deps.html
docs/reference/log_snakemake.html
docs/reference/parse_tax.html
docs/reference/paste_oxford_list.html
docs/reference/pool_taxon_counts.html
docs/reference/read_dist.html
docs/reference/read_tax.html
docs/reference/reexports.html
docs/reference/schtools-package.html
docs/reference/schtools.html
docs/reference/set_knitr_opts.html
docs/reference/theme_lucas-1.png
docs/reference/theme_lucas.html
docs/reference/theme_sovacool-1.png
docs/reference/theme_sovacool.html
docs/search.json
docs/sitemap.xml
inst/CITATION
inst/extdata/sample.final.thetayc.0.03.lt.ave.dist
inst/extdata/test.shared
inst/extdata/test.taxonomy
man/calc_relabun.Rd
man/close_enough.Rd
man/figures/logo.png
man/format_number.Rd
man/get_wildcards_tbl.Rd
man/inline_hook.Rd
man/is_nearly_whole.Rd
man/is_nondesc.Rd
man/load_deps.Rd
man/log_snakemake.Rd
man/parse_tax.Rd
man/paste_oxford_list.Rd
man/pool_taxon_counts.Rd
man/read_dist.Rd
man/read_tax.Rd
man/reexports.Rd
man/schtools-package.Rd
man/set_knitr_opts.Rd
man/theme_lucas.Rd
man/theme_sovacool.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
schtools.Rproj
tests/testthat.R
tests/testthat/test-calculate.R
tests/testthat/test-plot.R
tests/testthat/test-read_dist.R
tests/testthat/test-read_tax.R
tests/testthat/test-rmd_helpers.R
tests/testthat/test-shared.R
tests/testthat/test-snakemake.R
tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/articles/1F4A9_color.png
vignettes/articles/1F527_color.png
vignettes/articles/1F528_color.png
vignettes/articles/logo.Rmd
vignettes/articles/poo-hammer.png
vignettes/articles/schtools-logo.png
vignettes/introduction.Rmd
