calc_relabun: Calculate OTU relative abundances from a shared file
In SchlossLab/mothuR: Schloss Lab Tools for Reproducible Microbiome Research
calc_relabun R Documentation
Calculate OTU relative abundances from a shared file
Description
Calculate OTU relative abundances from a shared file
Usage
calc_relabun(abs_abun_dat)
Arguments
abs_abun_dat
a data frame from reading in a shared file.
Should contain a Group column for sample names,
Otu columns for absolute counts of each OTU,
and rows as each sample.
Value
a new data frame with OTU relative abundances in long format.
Author(s)
Kelly Sovacool sovacool@umich.edu
Examples
shared_dat <- readr::read_tsv(system.file("extdata", "test.shared",
package = "schtools"
))
shared_dat %>% calc_relabun()
SchlossLab/mothuR documentation built on Aug. 29, 2023, 1:32 a.m.
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| calc_relabun | R Documentation |
Calculate OTU relative abundances from a shared file
Description
Calculate OTU relative abundances from a shared file
Usage
calc_relabun(abs_abun_dat)
Arguments
abs_abun_dat |
a data frame from reading in a shared file.
Should contain a |
Value
a new data frame with OTU relative abundances in long format.
Author(s)
Kelly Sovacool sovacool@umich.edu
Examples
shared_dat <- readr::read_tsv(system.file("extdata", "test.shared",
package = "schtools"
))
shared_dat %>% calc_relabun()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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