parse_tax: Convert taxonomy strings into dataframe of labels based on...
In SchlossLab/mothuR: Schloss Lab Tools for Reproducible Microbiome Research
parse_tax R Documentation
Convert taxonomy strings into dataframe of labels based on taxonomic classification
Description
Convert taxonomy strings into dataframe of labels based on taxonomic classification
Usage
parse_tax(dat)
Arguments
dat
dataframe from mothur taxonomy file with columns OTU, Size, and Taxonomy
Value
a wide dataframe with taxonomic labels
Author(s)
Nick Lesniak, nlesniak@umich.edu
Examples
taxonomy_filepath <- system.file("extdata",
"test.taxonomy",
package = "schtools"
)
taxonomy_tbl <- read_tax(taxonomy_filepath)
head(taxonomy_tbl)
SchlossLab/mothuR documentation built on Aug. 29, 2023, 1:32 a.m.
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| parse_tax | R Documentation |
Convert taxonomy strings into dataframe of labels based on taxonomic classification
Description
Convert taxonomy strings into dataframe of labels based on taxonomic classification
Usage
parse_tax(dat)
Arguments
dat |
dataframe from mothur taxonomy file with columns |
Value
a wide dataframe with taxonomic labels
Author(s)
Nick Lesniak, nlesniak@umich.edu
Examples
taxonomy_filepath <- system.file("extdata",
"test.taxonomy",
package = "schtools"
)
taxonomy_tbl <- read_tax(taxonomy_filepath)
head(taxonomy_tbl)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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