read_tax: Read in a taxonomy file and parse it to a wide dataframe
In SchlossLab/mothuR: Schloss Lab Tools for Reproducible Microbiome Research
read_tax R Documentation
Read in a taxonomy file and parse it to a wide dataframe
Description
Read in a taxonomy file and parse it to a wide dataframe
Usage
read_tax(taxonomy_filename, sep = "\t")
Arguments
taxonomy_filename
filename of taxonomy file
sep
Character that separates fields of the taxonomy file. (Default: \t).
Value
dataframe of taxonomic labels, formatted by parse_tax()
Author(s)
Nick Lesniak, nlesniak@umich.edu
Kelly Sovacool, sovacool@umich.edu
Examples
taxonomy_filepath <- system.file("extdata",
"test.taxonomy",
package = "schtools"
)
taxonomy_tbl <- read_tax(taxonomy_filepath)
head(taxonomy_tbl)
SchlossLab/mothuR documentation built on Aug. 29, 2023, 1:32 a.m.
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| read_tax | R Documentation |
Read in a taxonomy file and parse it to a wide dataframe
Description
Read in a taxonomy file and parse it to a wide dataframe
Usage
read_tax(taxonomy_filename, sep = "\t")
Arguments
taxonomy_filename |
filename of taxonomy file |
sep |
Character that separates fields of the taxonomy file. (Default: |
Value
dataframe of taxonomic labels, formatted by parse_tax()
Author(s)
Nick Lesniak, nlesniak@umich.edu
Kelly Sovacool, sovacool@umich.edu
Examples
taxonomy_filepath <- system.file("extdata",
"test.taxonomy",
package = "schtools"
)
taxonomy_tbl <- read_tax(taxonomy_filepath)
head(taxonomy_tbl)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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