Files in ScitoVation/plethem
Population Life Course Exposure to Health Effects Modeling
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/AddDatasetModule.R
R/HESIreport.R
R/HT_IVIVE.R
R/HT_IVIVE_InputModule.R
R/HepaticMetabolism.R
R/IVIVEScaling.R
R/LifecoursePhysiology.R
R/NCAfunctions.R
R/ParseExposures.R
R/Project.R
R/QsarModels.R
R/QueryHelper.R
R/UserDb.R
R/exposureTRAGadget.R
R/genericPBPKModel.R
R/httkAddChemGadget.R
R/httkOralEqDoseGadget.R
R/httkUtils.R
R/importAllExposureModule.R
R/importBatchExposureModule.R
R/importHTTKDataModule.R
R/importList.R
R/importParameterSetModule.R
R/importSEEMDataModule.R
R/importSHEDSDataModule.R
R/loadTRA.R
R/newEditVariabilityModule.R
R/newProjectGadget.R
R/parseChemicals.R
R/pbpkUtils.R
R/performIVIVEModule.R
R/performReverseDosimetry.R
R/rapidPBPK_inits.R
R/runModels.R
R/saveParameterSetModule.R
R/saveRestoreParameterSetModule.R
R/updateUI.R
R/zzz.R
README.md
cran-comments.md
inst/.gitignore
inst/HT-IVIVE/server.R
inst/HT-IVIVE/ui.R
inst/ReverseDosimetry/server.R
inst/ReverseDosimetry/ui.R
inst/ReverseDosimetry/www/bootstrap.min.css
inst/ReverseDosimetry/www/button.css
inst/ReverseDosimetry/www/cropped-ScitoVation_icon-32x32.png
inst/ReverseDosimetry/www/home.html
inst/ReverseDosimetry/www/sciv_logo_transparent.png
inst/ReverseDosimetry/www/styles.css
inst/database/plethemUserDb.sqlite
inst/database/plethemdb.sqlite
inst/database/project.sqlite
inst/extdata/ConsExpoDemoFile.csv
inst/extdata/DemoProject.Rdata
inst/extdata/Demo_Project.Rdata
inst/extdata/pbpk_reporting_template.docx
inst/fishPBPK_pop/NOTES.txt
inst/fishPBPK_pop/README.md
inst/fishPBPK_pop/server.R
inst/fishPBPK_pop/ui.R
inst/fishPBPK_pop/www/bootstrap.min.css
inst/fishPBPK_pop/www/button.css
inst/fishPBPK_pop/www/home.html
inst/fishPBPK_pop/www/sciv_logo.png
inst/fishPBPK_pop/www/styles.css
inst/httk_pbtk/server.R
inst/httk_pbtk/ui.R
inst/httk_pbtk/www/bootstrap.min.css
inst/httk_pbtk/www/button.css
inst/httk_pbtk/www/home.html
inst/httk_pbtk/www/sciv_logo.png
inst/httk_pbtk/www/styles.css
inst/rapidPBPK.model
inst/rapidPBPK_pop/NOTES.txt
inst/rapidPBPK_pop/README.md
inst/rapidPBPK_pop/global.R
inst/rapidPBPK_pop/server.R
inst/rapidPBPK_pop/ui.R
inst/rapidPBPK_pop/www/bootstrap.min.css
inst/rapidPBPK_pop/www/button.css
inst/rapidPBPK_pop/www/home.html
inst/rapidPBPK_pop/www/sciv_logo.png
inst/rapidPBPK_pop/www/styles.css
inst/rstudio/addins.dcf
man/HT_IVIVE.Rd
man/HT_IVIVEUI.Rd
man/HostedDocumentation/01-plethem-forward_dosimetry_step_by_step_guide.docx
man/HostedDocumentation/02-plethem-route_to_route_extrapolation_step_by_step_guide.docx
man/HostedDocumentation/03-plethem-ht_ivive_step_by_step_guide.docx
man/HostedDocumentation/04-plethem-reverse_dosimetry_step_by_step_guide.docx
man/HostedDocumentation/05-plethem-kmd_step_by_step_guide.docx
man/HostedDocumentation/WorkshopDb.sqlite
man/HostedDocumentation/plethem_biomonitoring_data.csv
man/HostedDocumentation/plethem_demo_project.Rdata
man/HostedDocumentation/plethem_exposure_template.xlsx
man/HostedDocumentation/plethem_in_vivo_time_course.csv
man/HostedDocumentation/plethem_kmd_data.csv
man/HostedDocumentation/plethem_seem.sqlite
man/HostedDocumentation/plethem_tra_exposure_estimates.xls
man/HostedDocumentation/plethem_users_guide.docx
man/addChemsToHTTK.Rd
man/addDataSet.Rd
man/addDataSetUI.Rd
man/addPBPKequations.Rd
man/addParameters.Rd
man/calcMPCPPGL.Rd
man/calc_cyp2b6.Rd
man/calculatePartitionCoefficients.Rd
man/clearProjectDb.Rd
man/createEmptyUserDb.Rd
man/createHESIgraphs.Rd
man/createPBPKflowchart.Rd
man/externDbSelect.Rd
man/getAllCypData.Rd
man/getAllParamValuesForModel.Rd
man/getAllSetChoices.Rd
man/getAllVariabilityValuesForModel.Rd
man/getDbConn.Rd
man/getFileFolderPath.Rd
man/getLifecourseBodyHeight.Rd
man/getLifecourseBodyHeightMale.Rd
man/getLifecourseBodyWeight.Rd
man/getLifecourseBodyWeightFemale.Rd
man/getLifecourseBodyWeightMale.Rd
man/getLifecourseCardiacOutput.Rd
man/getLifecourseGlomerularFiltrationRate.Rd
man/getLifecourseLungDeadSpace.Rd
man/getLifecourseTidalVolume.Rd
man/getLifecourseTissuePerfusion.Rd
man/getLifecourseTissueVolumes.Rd
man/getLifecourseUrineProductionRate.Rd
man/getLifecourseVentilationRate.Rd
man/getMetabData.Rd
man/getNextID.Rd
man/getObservationSetChoices.Rd
man/getParameterSet.Rd
man/getProjectChemicalList.Rd
man/getVariabilitySetChoices.Rd
man/httkCalcOralEqDose.Rd
man/httkParameterPBTK.Rd
man/importAllExposureData.Rd
man/importAllExposureDataUI.Rd
man/importBatchExposure.Rd
man/importBatchExposureUI.Rd
man/importHTTKData.Rd
man/importHTTKDataUI.Rd
man/importParameterSet.Rd
man/importParameterSetUI.Rd
man/importSEEMData.Rd
man/importSEEMDataUI.Rd
man/importShedsData.Rd
man/importShedsDataUI.Rd
man/interactiveHT.Rd
man/interactivePBPK.Rd
man/interactiveReverseDosimetry.Rd
man/loadProject.Rd
man/loadTRA.Rd
man/mainDbSelect.Rd
man/mainDbUpdate.Rd
man/newEditVariability.Rd
man/newEditVariabilityUI.Rd
man/newProject.Rd
man/newProjectGadget.Rd
man/parseConsExpoFile.Rd
man/parseTRAFile.Rd
man/performIVIVE.Rd
man/performIVIVEUI.Rd
man/performPlethemNCA.Rd
man/plethem-package.Rd
man/preprocessUIData.Rd
man/projectDbSelect.Rd
man/projectDbUpdate.Rd
man/projectReadTable.Rd
man/projectWriteTable.Rd
man/qsarModelone.Rd
man/qsarModeltwo.Rd
man/readBatchChemicalFile.Rd
man/readOperaPredictions.Rd
man/reshapePlotData.Rd
man/runFDPBPK.Rd
man/runHTIVIVE.Rd
man/runPlthemHTIVIVE.Rd
man/runReverseDosimetry.Rd
man/saveAsParameterSet.Rd
man/saveAsParameterSetUI.Rd
man/saveProject.Rd
man/saveRestoreParameterSet.Rd
man/saveRestoreParameterSetUI.Rd
man/scale_cellular_enzymatic.Rd
man/scale_enzymatic.Rd
man/setUserDb.Rd
man/updateUIInputs.Rd
man/userDbSelect.Rd
man/userDbUpdate.Rd
news.md
plethem.Rproj
src/.gitignore
src/fishPBPK.c
src/init.c
src/rapidPBPK.c
tests/testthat.R
tests/testthat/test_physio.R
vignettes/Modeling_Using_PLETHEM.Rmd
vignettes/Modeling_Using_PLETHEM.html
