calc_genotype_distance: Calculate distance between two genotypes
In ShawHahnLab/chiimp: Computational, High-throughput Individual Identification through Microsatellite Profiling
View source: R/summarize_dataset.R
calc_genotype_distance R Documentation
Calculate distance between two genotypes
Description
Given two vectors representing genotypes, produce a scalar value for the
distance between them. The vectors should be sorted the same such that the
each two values of each vector represent two alleles of the same locus. In
this implementation the distance is simply the number of mismatches between
the alleles for each locus, accounting for either order of alleles.
Usage
calc_genotype_distance(g1, g2, na_reject = TRUE)
Arguments
g1
vector for genotype.
g2
vector for genotype.
na_reject
logical; should NA entries be treated as mismatches? TRUE
by default.
Value
numeric distance score for the pair of input genotypes.
ShawHahnLab/chiimp documentation built on Aug. 20, 2023, 1:41 a.m.
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View source: R/summarize_dataset.R
| calc_genotype_distance | R Documentation |
Calculate distance between two genotypes
Description
Given two vectors representing genotypes, produce a scalar value for the distance between them. The vectors should be sorted the same such that the each two values of each vector represent two alleles of the same locus. In this implementation the distance is simply the number of mismatches between the alleles for each locus, accounting for either order of alleles.
Usage
calc_genotype_distance(g1, g2, na_reject = TRUE)
Arguments
g1 |
vector for genotype. |
g2 |
vector for genotype. |
na_reject |
logical; should NA entries be treated as mismatches? TRUE by default. |
Value
numeric distance score for the pair of input genotypes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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