check_motif: Check sequences for STR repeats
In ShawHahnLab/chiimp: Computational, High-throughput Individual Identification through Microsatellite Profiling
check_motif R Documentation
Check sequences for STR repeats
Description
Return a logical vector specifying, for each entry, if the sequence contains
at least nrepeats perfect repeats of the matching locus' motif.
Usage
check_motif(sample.data, locus_attrs, nrepeats)
Arguments
sample.data
data frame of processed sequence data.
locus_attrs
data frame of attributes for loci to look for.
nrepeats
number of repeats of each locus" motif to require for a
match.
Value
logical vector indicating where repeats were observed.
ShawHahnLab/chiimp documentation built on Aug. 20, 2023, 1:41 a.m.
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| check_motif | R Documentation |
Check sequences for STR repeats
Description
Return a logical vector specifying, for each entry, if the sequence contains
at least nrepeats perfect repeats of the matching locus' motif.
Usage
check_motif(sample.data, locus_attrs, nrepeats)
Arguments
sample.data |
data frame of processed sequence data. |
locus_attrs |
data frame of attributes for loci to look for. |
nrepeats |
number of repeats of each locus" motif to require for a match. |
Value
logical vector indicating where repeats were observed.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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