Files in ShawHahnLab/chiimp
Computational, High-throughput Individual Identification through Microsatellite Profiling

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
GUIDE.Rmd
LICENSE
NAMESPACE
R/analyze_dataset.R R/analyze_sample.R R/chiimp.R R/configuration.R R/io.R R/markdown.R R/report.R R/summarize_dataset.R R/summarize_sample.R R/util.R README.md
environment.yml
inst/bin/chiimp
inst/bin/chiimp.AppleScript
inst/bin/chiimp.app/Contents/Info.plist
inst/bin/chiimp.app/Contents/MacOS/droplet.gz
inst/bin/chiimp.app/Contents/PkgInfo
inst/bin/chiimp.app/Contents/Resources/Scripts/main.rtf
inst/bin/chiimp.app/Contents/Resources/Scripts/main.scpt
inst/bin/chiimp.app/Contents/Resources/description.rtfd/TXT.rtf
inst/bin/chiimp.app/Contents/Resources/droplet.icns
inst/bin/chiimp.app/Contents/Resources/droplet.rsrc
inst/bin/chiimp.cmd
inst/bin/chiimp.command
inst/bin/chiimp.sh
inst/bin/demo.sh
inst/example_config.yml
inst/example_locus_attrs.csv
inst/report/report.Rmd
inst/report/report.css
inst/report/report_alignments.Rmd inst/report/report_contamination.Rmd inst/report/report_distances.Rmd inst/report/report_flag.Rmd inst/report/report_genotypes.Rmd inst/report/report_identifications.Rmd
install_linux.sh
install_linux_conda.sh
install_mac.command
install_windows.cmd
man/align_alleles.Rd man/allele_match.Rd man/analyze_dataset.Rd man/analyze_sample.Rd man/calc_genotype_distance.Rd man/check_length.Rd man/check_motif.Rd man/chiimp-package.Rd man/config.defaults.Rd man/find_artifact.Rd man/find_closest_matches.Rd man/find_matching_primer.Rd man/find_stutter.Rd man/format_pandoc_args.Rd man/full_analysis.Rd man/histogram.Rd man/histogram2.Rd man/load_allele_names.Rd man/load_config.Rd man/load_dataset.Rd man/load_genotypes.Rd man/load_locus_attrs.Rd man/load_seqs.Rd man/logmsg.Rd man/main.Rd man/make_allele_name.Rd man/make_dist_mat.Rd man/make_dist_mat_known.Rd man/make_entry_id.Rd man/make_rownames.Rd man/order_entries.Rd man/plot_alignment.Rd man/plot_cts_per_locus.Rd man/plot_dist_mat.Rd man/plot_heatmap.Rd man/plot_heatmap_artifacts.Rd man/plot_heatmap_homozygous.Rd man/plot_heatmap_prominent_seqs.Rd man/plot_heatmap_proportions.Rd man/plot_heatmap_stutter.Rd man/prepare_dataset.Rd man/render_report.Rd man/report_genotypes.Rd man/report_idents.Rd man/save_alignment_images.Rd man/save_alignments.Rd man/save_allele_seqs.Rd man/save_data.Rd man/save_dist_mat.Rd man/save_histograms.Rd man/save_results_summary.Rd man/save_sample_data.Rd man/summarize_attribute.Rd man/summarize_dataset.Rd man/summarize_genotypes.Rd man/summarize_genotypes_known.Rd man/summarize_sample.Rd man/summarize_sample_by_length.Rd man/summarize_sample_guided.Rd man/summarize_sample_naive.Rd man/tally_cts_per_locus.Rd man/tidy_analyzed_dataset.Rd
prep_release.sh
tests/testthat.R tests/testthat/helper_data.R tests/testthat/test_analyze_dataset.R tests/testthat/test_analyze_sample.R tests/testthat/test_io.R tests/testthat/test_report.R tests/testthat/test_summarize_dataset.R tests/testthat/test_summarize_sample.R
ShawHahnLab/chiimp documentation built on April 8, 2018, 3:36 p.m.