save_alignments: Save alignments to FASTA files
In ShawHahnLab/chiimp: Computational, High-throughput Individual Identification through Microsatellite Profiling
save_alignments R Documentation
Save alignments to FASTA files
Description
Take a list of alignments, one per locus, and save each to a separate FASTA
file in a specified directory. If any of the per-locus alignment objects is
NA it will be skipped. These are produced by summarize_dataset via
align_alleles.
Usage
save_alignments(alignments, dp)
Arguments
alignments
list of MSA alignment objects, such as created by
summarize_dataset via align_alleles. The name of each alignment will
be used for its filename.
dp
output directory path.
ShawHahnLab/chiimp documentation built on Aug. 20, 2023, 1:41 a.m.
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| save_alignments | R Documentation |
Save alignments to FASTA files
Description
Take a list of alignments, one per locus, and save each to a separate FASTA file in a specified directory. If any of the per-locus alignment objects is NA it will be skipped. These are produced by summarize_dataset via align_alleles.
Usage
save_alignments(alignments, dp)
Arguments
alignments |
list of MSA alignment objects, such as created by summarize_dataset via align_alleles. The name of each alignment will be used for its filename. |
dp |
output directory path. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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