match_known_genotypes: Associate known genotypes with samples
In ShawHahnLab/chiimp: Computational, High-throughput Individual Identification through Microsatellite Profiling
match_known_genotypes R Documentation
Associate known genotypes with samples
Description
Using the Name column of the given results summary data frame, pair each
called genotype with the known alleles. A data frame with two columns,
CorrectAllele1Seq and CorrectAllele2Seq, is returned. If matching entries
are found in Allele1Seq and/or Allele2Seq the order will be preserved,
and at this point the two allele entries should match up directly for
genotypes that were called correctly.
Usage
match_known_genotypes(results_summary, genotypes_known)
Arguments
results_summary
cross-sample summary data frame as produced by
analyze_dataset.
genotypes_known
data frame of known genotypes that should be compared
to the observed genotypes in the results, as loaded by load_genotypes.
Value
data frame with two columns for the two correct alleles, and rows
matching the input summary table.
ShawHahnLab/chiimp documentation built on Aug. 20, 2023, 1:41 a.m.
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| match_known_genotypes | R Documentation |
Associate known genotypes with samples
Description
Using the Name column of the given results summary data frame, pair each
called genotype with the known alleles. A data frame with two columns,
CorrectAllele1Seq and CorrectAllele2Seq, is returned. If matching entries
are found in Allele1Seq and/or Allele2Seq the order will be preserved,
and at this point the two allele entries should match up directly for
genotypes that were called correctly.
Usage
match_known_genotypes(results_summary, genotypes_known)
Arguments
results_summary |
cross-sample summary data frame as produced by analyze_dataset. |
genotypes_known |
data frame of known genotypes that should be compared to the observed genotypes in the results, as loaded by load_genotypes. |
Value
data frame with two columns for the two correct alleles, and rows matching the input summary table.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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