create_tabix_file: Create a tabix file using methylation calls

In Shians/NanoMethViz: Visualise methylation data from Oxford Nanopore sequencing

Create a tabix file using methylation calls

Description

Create a tabix file using methylation calls

Usage

create_tabix_file(
  input_files,
  output_file,
  samples = extract_file_names(input_files),
  verbose = TRUE
)

Arguments

input_files	the files to convert
output_file	the output file to write results to (must end in .bgz)
samples	the names of samples corresponding to each file
verbose	TRUE if progress messages are to be printed

Value

invisibly returns the output file path, creates a tabix file (.bgz) and its index (.bgz.tbi)

Examples

methy_calls <- system.file(package = "NanoMethViz",
    c("sample1_nanopolish.tsv.gz", "sample2_nanopolish.tsv.gz"), mustWork = FALSE)
temp_file <- paste0(tempfile(), ".tsv.bgz")

create_tabix_file(methy_calls, temp_file)

Shians/NanoMethViz documentation built on Oct. 11, 2024, 7:17 a.m.