query_exons: Query exons

In Shians/NanoMethViz: Visualise methylation data from Oxford Nanopore sequencing

Query exons

Description

Query a data.frame, NanoMethResult or ModBamResult for exon annotation.

Usage

query_exons_region(x, chr, start, end)

query_exons_gene_id(x, gene_id)

query_exons_symbol(x, symbol)

Arguments

x	the object to query.
chr	the chromosome to query.
start	the start of the query region.
end	the end of the query region.
gene_id	the gene_id to query.
symbol	the gene_id to query.

Value

data.frame of queried exons.

Functions

• query_exons_region(): Query region.

• query_exons_gene_id(): Query gene ID.

• query_exons_symbol(): Query gene symbol.

Shians/NanoMethViz documentation built on Oct. 11, 2024, 7:17 a.m.